#1
ok this is my order currently
guitar - wah- harmonix - whammy - distortion - flanger - loop - amp

so my question is placing an eq pedal
would i rather place it at the beginning or between flanger n loop?
#3
Depends on what you want to do with it. If you place it in front of the amp you can use it to tweak the EQ, and drive the preamp harder. If you put it in the loop, it can function as a clean boost instead of a preamp boost.

Want a clean boost or a preamp boost?
WTLTL 2011