I got the planet waves headstock tuner about 2 months ago and ive noticed that it has caused some light scratches on my headstock, right on top of the logo. Has anyone else had this problem? Any tips on how to get rid of these scratches? They seem quite light, when I pass a finger over the scratches, it doesnt feel deep at all. My guitar has a Gibson nitro finish.

Eh, Take it to a professional and see if he can't buff them out. And get rid of the headstock tuner. In my experience they're not very accurate...
You can call me Aaron.

Out on parole, any more instances of plum text and I get put back in...
I wouldn't use a headstock tuner either, I've never had a problem with my Korg CA-30 using the mic or input. I've heard plenty of reports of scratched headstocks from headstock tuners and I don't see any real advantage to them.
My Gear:
Suzuki Classical Guitar from 60s
B.C. Rich Warlock
Epiphone Les Paul Junior
Monterey Steel String Acoustic
Maton M255 Steel String Acoustic
Agile AL-3100 w/ EMG 81/85
Bugera 6262-212