So I have a Fender Strat and my high E string is really high even though I have lowered the saddle all the way down. If I lower my bridge anymore, my tremolo wouldnt really be a tremolo anymore...

All the other strings are good, how do I fix this?
if the nut is removable, maybe you have it flipped around. if not try filing down the nut in the space where that string goes.